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Species belonging to selected taxon:

Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002422
species: Raphanus sativus var. oleiformis
miRNA family: MIRf519
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTATAGCATCATGAGCAATCA

miRNA*
ACTGCTCGTGATGTTATATCA

mismatches: 1
bulges: 0

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pre-miRNA
GTACTTAATTTGTATAGCATCATGAGCAATCAGTCTTGGAAACTCAGTTGTTGGTTTCTCAATAGATTGACTGCTCGTGATGTTATATCATTTTCTCT

dot-bracket secondary structure
...........(((((((((((((((((.(((((((.(((((((........)))))))....))))))).)))))))))))))))))..........


SIMILARITIES
miRBase no hits

PMRD ath-miRf11142-akr: 2e-27

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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